Top 100 Payroll Companies in San Diego
The Best of December 2025Looking for a top payroll processing service in San Diego?
A typical payroll cycle in the United States is every two weeks. This means employees are paid after a two-week period on a designated date such as the 15th of the month and 30th of the month. Payroll processing accounts for hours worked, deductions, and taxes. If you're a small business, you may start off manually processing payroll. As you can image, manual payroll requires carefully tracking work hours and taxes and doing the math for each pay period. As your business grows, we suggest investing in a payroll company to help you manage payroll. A payroll management system also can help you track work hours, deductions and taxes automatically for each employee.
To assist you in your search for a partner, we’ve compiled this list of the top payroll companies in San Diego. Browse descriptions, feedback, and awards to find which can best suit your company’s needs.
List of the Best San Diego Payroll Processing Companies
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1$1,000+50 - 249 employeesSan Diego, CACFO Hub is a Fractional CFO Services company established in 2018. Their midsize team is located in San Diego, California; Irvine, California; Los Angeles, California and San Francisco, California. The company provides Fractional CFO Services, Business Consulting, Accounting, Finance & Accounting Outsourcing (FAO), and more.Read More
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2$5,000+50 - 249 employeesPoway, CAQuicKBooks Enterprise Customer Support is an Accounting company. Based in Poway, California, the company was founded in 2007. Their team offers Accounting and Finance & Accounting Outsourcing (FAO).Read More
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3Undisclosed2 - 9 employeesSan Diego, CARead More
Barsa & Company, CPAs is a full-service CPA firm headquartered in San Diego, Calif. They have about 23 employees. Since 1987, they have provided tax preparation, payroll processing, and bookkeeping services.
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4$5,000+50 - 249 employeesSan Diego, CAMidsize Accounting company Signature Analytics, is based in San Diego, California and Irvine, California. Their services include Accounting and Business Consulting.Read More
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5Undisclosed10 - 49 employeesSan Diego, CAGeorge Dimov, CPA is an Accounting company headquartered in New York, New York; San Francisco, California; Washington, District of Columbia and Seattle, Washington. The small company was founded in 2008. Their services include Accounting and Tax Law.Read More
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6Undisclosed2 - 9 employeesSan Diego, CAEstablished in 2005, United Payroll & Hr Services Inc is an Accounting company. Their services include Accounting.Read More
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7Undisclosed50 - 249 employeesSantee, CAFlores Financial Services, Inc. Is an Accounting company established in 1982. Their team focuses on Accounting.Read More
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8Undisclosed2 - 9 employeesSan Diego, CARead More
Christian Accounting and Payroll Services is a small accounting firm headquartered in San Diego, Calif. Founded in 1984, their main focus lines are payroll processing, tax preparation, and financial accounting.
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9Undisclosed2 - 9 employeesChula Vista, CASmall Accounting company Rufino Reyes Magpayo, CPA, is headquartered in Chula Vista, California. Their services include Accounting.Read More
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10Undisclosed10 - 49 employeesSan Diego, CABANKERS HILL ADVISORS is an Accounting company. The team is located in San Diego, California, and their services include Accounting and Business Consulting.Read More
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11$1,000+2 - 9 employeesSan Diego, CAFlux Accounting is an Accounting company. The small San Diego, California-based team provides Accounting and Business Consulting. The company was launched in 2018.Read More
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12Undisclosed2 - 9 employeesSan Diego, CAFounded in 1986, NTV ACCOUNTANTS is an Accounting company. The team offers Accounting and Business Consulting.Read More
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13Undisclosed2 - 9 employeesSan Diego, CAJCSN CORP is a small San Diego, California-based Commercial Financing and Accounting company. The team focuses on Commercial Financing and Accounting.Read More
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14Undisclosed10 - 49 employeesSan Diego, CAImperium First Consulting is an Accounting company. Their small team is in San Diego, California. Their team offers Accounting.Read More
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15Undisclosed2 - 9 employeesSan Diego, CAThefeld and Associates is an Accounting company. The firm is located in San Diego, California. Their services include Accounting and Business Consulting.Read More
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16Undisclosed10 - 49 employeesSan Diego, CAAB Tawil & Associates is an Accounting company. Based in San Diego, California, the agency was established in 2006. Their team provides Accounting and Business Consulting.Read More
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17Undisclosed10 - 49 employeesSan Diego, CAGoodsell & Company Inc., CPAs, a small Accounting company, is located in San Diego, California. Their services include Accounting.Read More
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18Undisclosed10 - 49 employeesChula Vista, CAWalter Lacayo Business Services, a small Accounting company, is located in Chula Vista, California. The team offers Accounting.Read More
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19Undisclosed10 - 49 employeesSan Diego, CACain Advisory Group, an Accounting company, is headquartered in San Diego, California. Their services include Accounting.Read More
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20Undisclosed50 - 249 employeesSan Diego, CALavine, Lofgren, Morris & Engelberg, LLP is an Accounting company. Established in 1985, the team provides Accounting. The firm is based in San Diego, California.Read More
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21Undisclosed2 - 9 employeesSan Diego, CADelsen & Company LLP is an Accounting company. Founded in 1995, the team provides Accounting and Business Consulting.Read More
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22Undisclosed2 - 9 employeesSan Diego, CASmall Accounting company Profitwise Accounting, is based in San Diego, California. Their services include Accounting.Read More
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23Undisclosed2 - 9 employeesSan Diego, CALaunched in 2008, TAXLANA, Inc. Is an Accounting company. The team provides Accounting and Business Consulting.Read More
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24Undisclosed2 - 9 employeesSan Diego, CASilberman Langner Associates is an Accounting company. Located in San Diego, California, the agency was founded in 1978. Their services include Accounting.Read More
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25Undisclosed2 - 9 employeesSan Diego, CAAccounting company Max And Pieters, Apc was launched in 1980. Based in San Diego, California, the team offers Accounting and Business Consulting.Read More
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26Undisclosed2 - 9 employeesSan Diego, CAAccounting company Paragon Accountants was launched in 2003. Headquartered in San Diego, California, the team focuses on Accounting.Read More
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27Undisclosed2 - 9 employeesSan Diego, CAADACI is an Accounting company. Launched in 2009, their team specializes in Accounting and Business Consulting.Read More
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28Undisclosed2 - 9 employeesChula Vista, CAIbarra, Carrillo + Soto, an Accounting company, is located in Chula Vista, California. The team offers Accounting.Read More
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29Undisclosed2 - 9 employeesChula Vista, CAOrdel & Ordel is an Accounting company. Their small team is in Chula Vista, California. Their team provides Accounting.Read More
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30Undisclosed2 - 9 employeesChula Vista, CASmall Accounting company MONTANO | Tax & CPA, is in Chula Vista, California. The team provides Accounting.Read More
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