Top 100 Payroll Companies in San Diego
The Best of December 2025Looking for a top payroll processing service in San Diego?
A typical payroll cycle in the United States is every two weeks. This means employees are paid after a two-week period on a designated date such as the 15th of the month and 30th of the month. Payroll processing accounts for hours worked, deductions, and taxes. If you're a small business, you may start off manually processing payroll. As you can image, manual payroll requires carefully tracking work hours and taxes and doing the math for each pay period. As your business grows, we suggest investing in a payroll company to help you manage payroll. A payroll management system also can help you track work hours, deductions and taxes automatically for each employee.
To assist you in your search for a partner, we’ve compiled this list of the top payroll companies in San Diego. Browse descriptions, feedback, and awards to find which can best suit your company’s needs.
List of the Best San Diego Payroll Processing Companies
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61$1,000+50 - 249 employeesEncinitas, CADark Horse CPAs, an Accounting company, was launched in 2015. The team focuses on Accounting and Finance & Accounting Outsourcing (FAO) and is based in Encinitas, California and Roswell, Georgia.Read More
Industries
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62Undisclosed2 - 9 employeesSan Diego, CACKYFS Inc. Is an Accounting company. They are based in San Diego, California and have small team. They specialize in Accounting.Read More
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63Undisclosed2 - 9 employeesSan Diego, CABased in San Diego, California, Correia & Associates is an Accounting company. They focus on Accounting.Read More
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64Undisclosed10 - 49 employeesEncinitas, CAFounded in 1997, Halverson & Company is an Accounting company. The small team provides Accounting.Read More
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65Undisclosed2 - 9 employeesSan Diego, CAF & C Payroll & Accounting is a small Accounting company in San Diego, California. The team specializes in Accounting.Read More
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66Undisclosed2 - 9 employeesCarlsbad, CAStrategic Business Alliance, LLC is an Accounting company. Their small team is headquartered in Carlsbad, California. Their services include Accounting.Read More
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67Undisclosed2 - 9 employeesSan Diego, CAAccounting company STEES, WALKER & COMPANY LLP was established in 2014. The agency specializes in Accounting, and is small.Read More
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68Undisclosed10 - 49 employeesSan Marcos, CAEmployers Resource is an Accounting and HR Consulting company. Their small team is based in San Marcos, California. Their team specializes in Accounting and HR Consulting.Read More
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69Undisclosed2 - 9 employeesEncinitas, CAWhat A Relief, a small Accounting company, is in Encinitas, California. The team specializes in Accounting.Read More
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70Undisclosed2 - 9 employeesSan Diego, CASmall Accounting company Achieve Accounting Consulting, is based in San Diego, California. The team focuses on Accounting.Read More
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71Undisclosed2 - 9 employeesCarlsbad, CAEstablished in 2006, White Bookkeeping and Business Management is an Accounting company. The company specializes in Accounting.Read More
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72Undisclosed2 - 9 employeesSan Diego, CABD TAX & ACCOUNTING is an Accounting company. The team is in San Diego, California, and their services include Accounting.Read More
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73$50,000+2 - 9 employeesOceanside, CAAmerican Time and Labor Company is a small Accounting company headquartered in Irvine, California and Oceanside, California. The team focuses on Accounting and PEO/Employee Leasing.Read More
Industries
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74Undisclosed2 - 9 employeesCarlsbad, CAAccounting company Ariniello & Associates, CPA is located in Carlsbad, California. The team focuses on Accounting and Business Consulting.Read More
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75Undisclosed2 - 9 employeesCarlsbad, CAALDRICH WEALTH is a Carlsbad, California-based Accounting company. Their services include Accounting.Read More
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76Undisclosed2 - 9 employeesCarlsbad, CAProAdvisor CPA is an Accounting company founded in 2012. The company focuses on Accounting.Read More
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77Undisclosed2 - 9 employeesCarlsbad, CASmall Accounting company Bottom Line Management, is headquartered in Carlsbad, California. The team offers Accounting.Read More
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78Undisclosed2 - 9 employeesCarlsbad, CASmall Accounting company Bill Slattery & Associates, is based in Carlsbad, California. Their services include Accounting and Business Consulting.Read More
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79Undisclosed2 - 9 employeesVista, CAAdvantage Taxes & Postal is an Accounting company. They provide Accounting and were established in 2014. The firm is headquartered in Vista, California.Read More
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80Undisclosed2 - 9 employeesCarlsbad, CASTERLING TAX GROUP INC, a small Accounting company, is headquartered in Carlsbad, California. Their services include Accounting and Business Consulting.Read More
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81Undisclosed2 - 9 employeesCarlsbad, CAHeadquartered in Carlsbad, California, SMARTLedger is a small Accounting company. Their services include Accounting.Read More
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82Undisclosed2 - 9 employeesCarlsbad, CACarlsbad Bookkeper is an Accounting company. They are located in Carlsbad, California and have small team. Their services include Accounting.Read More
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83Undisclosed2 - 9 employeesCarlsbad, CABrodsky Professional Services, LLC is an Accounting company launched in 1999. The small team provides Accounting.Read More
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84Undisclosed2 - 9 employeesCarlsbad, CAAccounting company AccountingEdge Consulting, LLC was founded in 2017. The small team focuses on Accounting.Read More
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85Undisclosed2 - 9 employeesCarlsbad, CALinda Rosso Tax & Bookkeeping is an Accounting company. They are based in Carlsbad, California and have small team. Their services include Accounting.Read More
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86Undisclosed2 - 9 employeesOceanside, CASmall Accounting company EZ TAX & ACCOUNTING, INC., is in Oceanside, California. The team offers Accounting.Read More
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87Undisclosed2 - 9 employeesVista, CAPlaza Tax Service, a small Accounting company, is located in Vista, California. The team provides Accounting and Business Consulting.Read More
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88Undisclosed2 - 9 employeesVista, CABottomline Bookkeeping Payroll & Tax Services is an Accounting company. Their small team is in Vista, California. Their services include Accounting.Read More
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89Undisclosed2 - 9 employeesVista, CAHeadquartered in Vista, California, Accounting Value, Inc. Is a small Accounting company. Their services include Accounting.Read More
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90Undisclosed2 - 9 employeesCarlsbad, CABright North Accounting is an Accounting company. The Carlsbad, California-based agency focuses on Accounting.Read More
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